HISTORY GEOSHARE, DRINET, U2U
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1 INTEGRATING HUBZERO AND IRODS GEOSPATIAL DATA MANAGEMENT FOR COLLABORATIVE SCIENTIFIC RESEARCH Rajesh Kalyanam, Robert Campbell, Samuel Wilson, Pascal Meunier, Lan Zhao, Elizabett Hillery, Carol Song Purdue University
2 HISTORY GEOSHARE, DRINET, U2U Share Researchers Time-series, geospa2al data and regular files Processing Tools - Manage, query, access, share scien2fic data - Research collabora2on - Quick preview - Run shared postprocessing tools - Compare data from different sources
3 HUBZERO Cyberinfrastructure plaeorm User collabora2on Ø Groups, projects, blogs, message boards Instruc2on Ø Courses, tutorials, lectures, seminar series Data sharing, simple preview, cura2on Ø Publica2ons with file bundles, suppor2ng documents, DOI genera2on
4 HUBZERO OVER THE YEARS Nanotechnology Educa2on, Outreach Medical Research HPC Materials and Manufacturing
5 HUB TOOLS Web-enable scien2fic tools Rappture Tool Kit Ø Common GUI elements Ø Support for various programming languages Ø Output visualiza2on Containerized Ø OpenVZ containers with VNC support Data transfer to/from local desktop
6 GABBS Reusable building blocks for geospa2al data Ø Processing Ø Metadata extrac2on Ø Map visualiza2on Ø Search Part of the NSF DIBBS ini2a2ve Ø Data sharing for collabora2ve research Ø Diverse domains
7 End User GABBS ARCHITECTURE New Capabilities Computation Visualization Data Sharing Data presenta2on Remote servers Maps Control widgets Tool builder Data processing Overlays Geo-processing Data formats Standard protocols Data management Data sharing Data-Tool connectors HUBzero Platform for Scientific Collaboration Computation tools and online databases, Content publishing, Collaboration (group, project), Learning (courses, self-help), Support (tickets, Q&A), Community (forum, review, calendar)
8 GABBS DATA LIFECYCLE Not automa2c! Annotate, Extract Metadata Process, Transform Data No Common Access Visualize Share
9 HUBZERO AND IRODS INTEGRATION Require central storage mechanism uniformly accessible throughout data lifecycle Needs to support easy extensibility to handle large file quan22es Support for processing co-located with data irods storage underlies Hub Projects Filespace Ø irods FUSE mount onto hub webserver Ø PHP Flysystem adapter for CMS access, future expansion
10 HUBZERO AND IRODS INTEGRATION Hub tools have local access to Hub Project files Ø Bind mount users accessible collections on webserver into tool OpenVZ container Ø Can serve as tool input source and output destination, simplifying development Supports pre, post-processing of files Ø Automa2c metadata extrac2on, inges2on into Apache Solr on file crea2on Ø On-demand bulk metadata update Ø On-demand visualiza2on of geospa2al files
11 HUBZERO AND IRODS INTEGRATION
12 GEOSPATIAL METADATA EXTRACTION Implemented as irods microservice Ø Runs on file creation, attached to acpostprocforput Ø Uses GDAL C++ APIs to process vector, raster geospatial files Ø Abstracts extracted information into 15 common Dublin Core Metadata Initiative (DCMI) fields Ø Also extracts geospatial bounds for subsequent geo-search Metadata storage Ø Extracted metadata stored as irods AVU triples Ø Ingested into Apache Solr for subsequent search
13 METADATA UPDATE Implemented as irods microservice Ø Runs on-demand from Hub Project Files UI Ø irods PHP APIs used to execute irods rule Ø Metadata to be updated provided as key-value pair array input Ø Supports arbitrary additional non-dcmi key-value pairs Index update Ø Solr index updated with changes to DCMI fields only
14 GEOSPATIAL PREVIEW Implemented as irods microservice Ø Runs on-demand from Hub Project Files UI Ø Enabled for supported file extensions Preview Implementa2on Ø Files registered as GeoServer layers azer appropriate processing Ø GDAL APIs used for reprojec2on, format conversion and subdataset extrac2on Ø Layer name, projec2on informa2on returned as rule output Ø OpenLayers Javascript library used for map display
15 GOING FORWARD irods Federa2on to link dis2nct hubs for data and tool sharing Ø Poten2ally enable tool workflows across hubs Integrate other storage mechanisms into hub projects Ø Support offline data replica2on between irods storage and these other storage providers (Globus, Dropbox, Google Drive) Integrate data access protocols (OpenDAP) Ø Allow data subseang for chunked access to larger files
16 ACKNOWLEDGEMENTS This work was supported by the NSF Award ACI CIF21 DIBBs : Integra2ng Geospa2al Capabili2es into HUBzero
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